Command: testsuite::test_iaf_ps_psp_accuracy

Synopsis

(test_iaf_ps_psp_accuracy) run -> compare one voltage with analytics

[1] Rotter S & Diesmann M (1999) Exact simulation of time-invariant linear

systems with applications to neuronal modeling. Biologial Cybernetics

81:381-402.

code updated for NEST 2 but not yet this comment

test_iaf_psp.sli checks the voltage response of the iaf_neuron

model neuron to a single incoming spike. The voltage excursion is

called post-synaptic potential (PSP). In the iaf_neuron model neuron

the post-synaptic current is described by an alpha-function

(see [1] and references therein). The resulting PSP has a finite

rise-time with voltage and current beeing zero in the initial

condition (see [1]).

The dynamics is tested by connecting a device that emits spikes

at individually configurable times (see test_spike_generator) to

a model neuron.

The weight of the connection specifies the peak value (amplitude)

of the post-synaptic current (PSC) in pA.

The subthreshold dynamics of the iaf_neuron is integrated exactly.

Therefore it is suitable to check whether the simulation kernel

produces results independent of the computation step size

(resolution).

In order to obtain identical results for different computation

step sizes h the SLI script needs to be independent of h.

This is achieved by specifying all time parameters in milliseconds

(ms). In particular the time of spike emission and the synaptic

delay need to be integer multiples of the computation step sizes

to be tested. test_iaf_dc_aligned_delay demonstrates the strategy

for the case of DC current input.

References

[1] Rotter S & Diesmann M (1999) Exact simulation of time-invariant linear

systems with applications to neuronal modeling. Biologial Cybernetics

81:381-402.

Description

code updated for NEST 2 but not yet this comment

test_iaf_psp.sli checks the voltage response of the iaf_neuron

model neuron to a single incoming spike. The voltage excursion is

called post-synaptic potential (PSP). In the iaf_neuron model neuron

the post-synaptic current is described by an alpha-function

(see [1] and references therein). The resulting PSP has a finite

rise-time with voltage and current beeing zero in the initial

condition (see [1]).

The dynamics is tested by connecting a device that emits spikes

at individually configurable times (see test_spike_generator) to

a model neuron.

The weight of the connection specifies the peak value (amplitude)

of the post-synaptic current (PSC) in pA.

The subthreshold dynamics of the iaf_neuron is integrated exactly.

Therefore it is suitable to check whether the simulation kernel

produces results independent of the computation step size

(resolution).

In order to obtain identical results for different computation

step sizes h the SLI script needs to be independent of h.

This is achieved by specifying all time parameters in milliseconds

(ms). In particular the time of spike emission and the synaptic

delay need to be integer multiples of the computation step sizes

to be tested. test_iaf_dc_aligned_delay demonstrates the strategy

for the case of DC current input.

File

testsuite/unittests/test_iaf_ps_psp_accuracy.sli

Author

May 2005
February 2008
Diesmann