Dear Dennis,

Thanks for looking into this.
I will report back if I find any solution, but looking forward to hearing from the experts as well.

Best,
Nilton


On Fri, Oct 16, 2020 at 4:37 AM Dennis Terhorst <d.terhorst@fz-juelich.de> wrote:

Dear Nilton,

this is probably a deep compile configuration issue. Maybe our expert for the MPI libraries context has an idea what could cause this. I will contact him and ask if he could have a look at this.

Best,
Dennis

On 06.10.20 02:18, Nilton Liuji Kamiji wrote:
Dear all,

I have compiled NEST master@6997cae6c onFedora 32 with both,
1- gcc (10.2.1) and OpenMPI (4.0.4): the default on this distro
2 - Intel Parallel Studio XE update 2 with GSL compiled from source using
the same compiler
using same configuration (-Dwith-mpi=ON, -Dwith-boost=ON) . On Intel,
-Dwith-gsl=${GSL_DIR} was
added to point to the GSL built with the Intel Compiler.

On the gcc configuration, all tests worked fine (I defined
OMPI_MCA_rmaps_base_oversubscribe=1 to
avoid oversubscription error as reported in issue #1758).

On the other hand, on the Intel configuration, several MPI tests have
failed as described in the
attached files. (To allow oversubscription the following variables were
defined: I_MPI_WAIT_MODE=1
and I_MPI_THREAD_YIELD=3)

I report it here as it is probably not directly a NEST code issue, but hope
that someone in the community
could have the answer. If I should submit it as an issue on GitHub, please
let me know.

Attached files:
cmake_command_summary.txt : cmake command invocation and summary
installcheck.log : make installcheck log
reports.tar.gz : reports folder created by make installcheck; it also
contains the instalcheck.log file above

Best,
Nilton


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Dipl.-Phys. Dennis Terhorst
Coordinator Software Development

Institute of Neuroscience and Medicine (INM-6)
Computational and Systems Neuroscience &
Theoretical Neuroscience,
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Jülich Research Centre, Member of the Helmholz Association and JARA
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--
Nilton Liuji Kamiji
University of Sao Paulo
Department of Physics, FFCLRP
Laboratory of Neural Systems
Phone: +55 16 3315 3859