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[NEST users] Docker container with NEST3 and music

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Benjamin Staude

4 Jun 2020 4 Jun '20

11:55 a.m.

Hi NEST users, Does anyone know if there is a Docker container available that has NEST3 and the MUSIC interface installed? Best regards, Benjamin -- -- -- Dr. Benjamin Staude | Paul-Lincke-Ufer 7 | 10999 Berlin | benjamin.staude(a)gmail.com

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Steffen Graber

4 Jun 4 Jun

12:25 p.m.

Hi Benjamin you can use the official NEST Docker images. Follow the installation instructions here: https://nest-simulator.readthedocs.io/en/stable/installation/index.html For NEST3: docker pull nestsim/nest:3.0 docker run --rm -it -e LOCAL_USER_ID=`id -u $USER` -v $(pwd):/opt/data -p 8080:8080 nestsim/nest:3.0 /bin/bash or with jupyter notebook: docker run --rm -e LOCAL_USER_ID=`id -u $USER` -v $(pwd):/opt/data -p 8080:8080 nestsim/nest:3.0 notebook It would be nice to get a feedback if the docker image could help you. Best Steffen Am 04.06.20 um 11:55 schrieb Benjamin Staude:

Hi NEST users, Does anyone know if there is a Docker container available that has NEST3 and the MUSIC interface installed? Best regards, Benjamin -- -- -- Dr. Benjamin Staude | Paul-Lincke-Ufer 7 | 10999 Berlin | benjamin.staude(a)gmail.com _______________________________________________ NEST Users mailing list -- users(a)nest-simulator.org To unsubscribe send an email to users-leave(a)nest-simulator.org

-- ------------------------------------------------------------------------------------- Steffen Graber SimLab Neuroscience Division HPC in Neuroscience Jülich Supercomputing Centre Institute for Advanced Simulation Forschungszentrum Jülich GmbH E-mail: s.graber(a)fz-juelich.de Phone: +49 2461 61 85457 http://www.fz-juelich.de/ias/jsc Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Institute for Advanced Simulation (IAS-6) Theoretical Neuroscience & JARA Institute Brain Structure-Function Relationships (INM-10) Forschungszentrum Jülich GmbH http://www.csn.fz-juelich.de ------------------------------------------------------------------------------------- Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt -------------------------------------------------------------------------------------

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Steffen Graber

2:22 p.m.

Hi Benjamin Let me clarify: NEST 3 does not exist yet. This NEST Docker Image contains a NEST version created from the latest sources of NEST (The newest updates were taken over a few minutes ago). Thus it offers only a first preview of the coming NEST 3. Best Steffen Am 04.06.20 um 12:25 schrieb Steffen Graber:

Hi Benjamin you can use the official NEST Docker images. Follow the installation instructions here: https://nest-simulator.readthedocs.io/en/stable/installation/index.html For NEST3: docker pull nestsim/nest:3.0 docker run --rm -it -e LOCAL_USER_ID=`id -u $USER` -v $(pwd):/opt/data -p 8080:8080 nestsim/nest:3.0 /bin/bash or with jupyter notebook: docker run --rm -e LOCAL_USER_ID=`id -u $USER` -v $(pwd):/opt/data -p 8080:8080 nestsim/nest:3.0 notebook It would be nice to get a feedback if the docker image could help you. Best Steffen Am 04.06.20 um 11:55 schrieb Benjamin Staude:

Hi NEST users, Does anyone know if there is a Docker container available that has NEST3 and the MUSIC interface installed? Best regards, Benjamin -- -- -- Dr. Benjamin Staude | Paul-Lincke-Ufer 7 | 10999 Berlin | benjamin.staude(a)gmail.com _______________________________________________ NEST Users mailing list -- users(a)nest-simulator.org To unsubscribe send an email to users-leave(a)nest-simulator.org

_______________________________________________ NEST Users mailing list -- users(a)nest-simulator.org To unsubscribe send an email to users-leave(a)nest-simulator.org

-- ------------------------------------------------------------------------------------- Steffen Graber SimLab Neuroscience Division HPC in Neuroscience Jülich Supercomputing Centre Institute for Advanced Simulation Forschungszentrum Jülich GmbH E-mail: s.graber(a)fz-juelich.de Phone: +49 2461 61 85457 http://www.fz-juelich.de/ias/jsc Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Institute for Advanced Simulation (IAS-6) Theoretical Neuroscience & JARA Institute Brain Structure-Function Relationships (INM-10) Forschungszentrum Jülich GmbH http://www.csn.fz-juelich.de ------------------------------------------------------------------------------------- Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt -------------------------------------------------------------------------------------

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Benjamin Staude

9:16 p.m.

Hi Steffen, I knew NEST3 isn’t released yet, therefore I didn’t dare to just try to run the `docker pull nestsim/nest:3.0` … But it worked, thanks a lot! Only issue I still have now is how to communicate between my host and the container using python-osc. To be precise, I need to send osc-messages form the host into the container and vice versa. With virtual-box, I had direct access to the host and client IPs, but with docker that seems to be a bit more complicated. Do you have experience with this? Best, Benjamin

On 4. Jun 2020, at 14:22, Steffen Graber <s.graber(a)fz-juelich.de> wrote: Hi Benjamin Let me clarify: NEST 3 does not exist yet. This NEST Docker Image contains a NEST version created from the latest sources of NEST (The newest updates were taken over a few minutes ago). Thus it offers only a first preview of the coming NEST 3. Best Steffen Am 04.06.20 um 12:25 schrieb Steffen Graber:

Hi Benjamin you can use the official NEST Docker images. Follow the installation instructions here: https://nest-simulator.readthedocs.io/en/stable/installation/index.html For NEST3: docker pull nestsim/nest:3.0 docker run --rm -it -e LOCAL_USER_ID=`id -u $USER` -v $(pwd):/opt/data -p 8080:8080 nestsim/nest:3.0 /bin/bash or with jupyter notebook: docker run --rm -e LOCAL_USER_ID=`id -u $USER` -v $(pwd):/opt/data -p 8080:8080 nestsim/nest:3.0 notebook It would be nice to get a feedback if the docker image could help you. Best Steffen Am 04.06.20 um 11:55 schrieb Benjamin Staude:

Hi NEST users, Does anyone know if there is a Docker container available that has NEST3 and the MUSIC interface installed? Best regards, Benjamin -- -- -- Dr. Benjamin Staude | Paul-Lincke-Ufer 7 | 10999 Berlin | benjamin.staude(a)gmail.com _______________________________________________ NEST Users mailing list -- users(a)nest-simulator.org To unsubscribe send an email to users-leave(a)nest-simulator.org

_______________________________________________ NEST Users mailing list -- users(a)nest-simulator.org <mailto:users@nest-simulator.org> To unsubscribe send an email to users-leave(a)nest-simulator.org <mailto:users-leave@nest-simulator.org>

-- ------------------------------------------------------------------------------------- Steffen Graber SimLab Neuroscience Division HPC in Neuroscience Jülich Supercomputing Centre Institute for Advanced Simulation Forschungszentrum Jülich GmbH E-mail: s.graber(a)fz-juelich.de Phone: +49 2461 61 85457 http://www.fz-juelich.de/ias/jsc Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Institute for Advanced Simulation (IAS-6) Theoretical Neuroscience & JARA Institute Brain Structure-Function Relationships (INM-10) Forschungszentrum Jülich GmbH http://www.csn.fz-juelich.de ------------------------------------------------------------------------------------- Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt -------------------------------------------------------------------------------------

-- -- -- Dr. Benjamin Staude | Paul-Lincke-Ufer 7 | 10999 Berlin | benjamin.staude(a)gmail.com

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Steffen Graber

5 Jun 5 Jun

8:05 a.m.

Hi Benjamin, I do not know python-osc. But it seems to be a client-server architecture with communication over a special port. In Docker, you can do that with: -p 8080:80 This maps the container port 80 to the local host port 8080. More about networking here: https://docs.docker.com/config/containers/container-networking/ Best Steffen Am 04.06.20 um 21:16 schrieb Benjamin Staude:

Hi Steffen, I knew NEST3 isn’t released yet, therefore I didn’t dare to just try to run the `docker pull nestsim/nest:3.0` … But it worked, thanks a lot! Only issue I still have now is how to communicate between my host and the container using python-osc. To be precise, I need to send osc-messages form the host into the container and vice versa. With virtual-box, I had direct access to the host and client IPs, but with docker that seems to be a bit more complicated. Do you have experience with this? Best, Benjamin

On 4. Jun 2020, at 14:22, Steffen Graber <s.graber(a)fz-juelich.de <mailto:s.graber@fz-juelich.de>> wrote: Hi Benjamin Let me clarify: NEST 3 does not exist yet. This NEST Docker Image contains a NEST version created from the latest sources of NEST (The newest updates were taken over a few minutes ago). Thus it offers only a first preview of the coming NEST 3. Best Steffen Am 04.06.20 um 12:25 schrieb Steffen Graber:

Hi Benjamin you can use the official NEST Docker images. Follow the installation instructions here: https://nest-simulator.readthedocs.io/en/stable/installation/index.html For NEST3: docker pull nestsim/nest:3.0 docker run --rm -it -e LOCAL_USER_ID=`id -u $USER` -v $(pwd):/opt/data -p 8080:8080 nestsim/nest:3.0 /bin/bash or with jupyter notebook: docker run --rm -e LOCAL_USER_ID=`id -u $USER` -v $(pwd):/opt/data -p 8080:8080 nestsim/nest:3.0 notebook It would be nice to get a feedback if the docker image could help you. Best Steffen Am 04.06.20 um 11:55 schrieb Benjamin Staude:

Hi NEST users, Does anyone know if there is a Docker container available that has NEST3 and the MUSIC interface installed? Best regards, Benjamin -- -- -- Dr. Benjamin Staude | Paul-Lincke-Ufer 7 | 10999 Berlin | benjamin.staude(a)gmail.com _______________________________________________ NEST Users mailing list -- users(a)nest-simulator.org To unsubscribe send an email to users-leave(a)nest-simulator.org

_______________________________________________ NEST Users mailing list -- users(a)nest-simulator.org <mailto:users@nest-simulator.org> To unsubscribe send an email to users-leave(a)nest-simulator.org <mailto:users-leave@nest-simulator.org>

-- ------------------------------------------------------------------------------------- Steffen Graber SimLab Neuroscience Division HPC in Neuroscience Jülich Supercomputing Centre Institute for Advanced Simulation Forschungszentrum Jülich GmbH E-mail: s.graber(a)fz-juelich.de <mailto:s.graber@fz-juelich.de> Phone: +49 2461 61 85457 http://www.fz-juelich.de/ias/jsc Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Institute for Advanced Simulation (IAS-6) Theoretical Neuroscience & JARA Institute Brain Structure-Function Relationships (INM-10) Forschungszentrum Jülich GmbH http://www.csn.fz-juelich.de ------------------------------------------------------------------------------------- Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt -------------------------------------------------------------------------------------

-- -- -- Dr. Benjamin Staude | Paul-Lincke-Ufer 7 | 10999 Berlin | benjamin.staude(a)gmail.com <mailto:benjamin.staude@gmail.com> _______________________________________________ NEST Users mailing list -- users(a)nest-simulator.org To unsubscribe send an email to users-leave(a)nest-simulator.org

-- ------------------------------------------------------------------------------------- Steffen Graber SimLab Neuroscience Division HPC in Neuroscience Jülich Supercomputing Centre Institute for Advanced Simulation Forschungszentrum Jülich GmbH E-mail: s.graber(a)fz-juelich.de Phone: +49 2461 61 85457 http://www.fz-juelich.de/ias/jsc Institute of Neuroscience and Medicine (INM-6) Computational and Systems Neuroscience & Institute for Advanced Simulation (IAS-6) Theoretical Neuroscience & JARA Institute Brain Structure-Function Relationships (INM-10) Forschungszentrum Jülich GmbH http://www.csn.fz-juelich.de ------------------------------------------------------------------------------------- Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt -------------------------------------------------------------------------------------

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