15 Oct
2019
15 Oct
'19
2:09 p.m.
Hi Benjamin
I have updated the docker image with NEST 2.18.0 ( the 'latest' image
will follow in the next days).
Please download/update with:
docker pull nestsim/nest:2.18.0
Go to the folder with your MUSIC scripts and start the container:
docker run -it --rm -e LOCAL_USER_ID=`id -u $USER` -v
$(pwd):/opt/data nestsim/nest:2.18.0 /bin/bash
You are now in the shell of the container. Here you can execute the
example program
mpirun -np 2 music /opt/data/minimalmusicsetup.music
So far I have only tested this simple example (minimalmusicsetup.music)
on a Mac. It would be nice to know if this is a usable workflow for you
and and if other, more realistic applications are possible.
In order to achieve the greatest flexibility in dealing with NEST and
MUSIC, a standard installation from source code is recommended.
A small note:
The example in the documentation is not up to date. Please use
'nest.ll_api.sli_run' and 'nest.ll_api.spp' instead of
'nest.sli_run'
and 'nest.spp'.
I will adjust this soon in the docs.
Best
Steffen
Am 08.10.19 um 09:56 schrieb Benjamin Staude:
Hi there,
I tried to run the basic example
from https://nest-simulator.readthedocs.io/en/latest/guides/using_nest_with_musi… in
the docker environment of NEST (https://github.com/nest/nest-docker)
on my OSX host.
To be precise, I create the files minimalmusicsetup.music,
minimalmusicsetup_sendnest.py and minimalmusicsetup_receivenest.py in
the root directory (~/nest-docker) of the host system, and then
called mpirun -np 2 music minimalmusicsetup.music from within docker.
The output was:
MUSIC: Unable to determine process rank.
MUSIC: Did you launch music using mpirun?
MUSIC: If so, check the comments about porting in README.
-------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code.. Per user-direction, the job has been aborted.
-------------------------------------------------------
MUSIC: Unable to determine process rank.
MUSIC: Did you launch music using mpirun?
MUSIC: If so, check the comments about porting in README.
--------------------------------------------------------------------------
mpirun detected that one or more processes exited with non-zero
status, thus causing
the job to be terminated. The first process to do so was:
Process name: [[46746,1],0]
Exit code: 1
Can anyone help?
Thanks in advance,
Benjamin
-- -- --
Dr. Benjamin Staude | Paul-Lincke-Ufer 7 | 10999 Berlin |
benjamin.staude(a)gmail.com <mailto:benjamin.staude@gmail.com>
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--
Steffen Graber
SimLab Neuroscience
Division HPC in Neuroscience
Jülich Supercomputing Centre
Institute for Advanced Simulation
Forschungszentrum Jülich GmbH
E-mail: s.graber(a)fz-juelich.de <mailto:s.graber@fz-juelich.de>
Phone: +49 2461 61 85457
http://www.fz-juelich.de/ias/jsc
Institute of Neuroscience and Medicine (INM-6)
Computational and Systems Neuroscience &
Institute for Advanced Simulation (IAS-6)
Theoretical Neuroscience &
JARA Institute Brain Structure-Function Relationships (INM-10)
Forschungszentrum Jülich GmbH
http://www.csn.fz-juelich.de